My updated CV can be downloaded here.

 

PubMed publications

Google Scholar publications, patents and citations

Google scholar profile
 

Selected Publications

Robust Estimation Of Hi-C Contact Matrices Using Fused Lasso Reveals Preferential Insulation Of Super-Enhancers By Strong TAD Boundaries
Gong Y, Lazaris C, Lozano A, Kambadur P, Ntziachristos P, Aifantis I* and Tsirigos A* (*co-corresponding author)
biorXiv, May 2017

lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets
Gong Y, Huang HT, Liang Y, Trimarchi T, Aifantis I* and Tsirigos A* (*co-corresponding author)
BMC Genomics, June 2017

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Lazaris C, Kelly S, Ntziachristos P, Aifantis I* and Tsirigos A* (*co-corresponding author)
BMC Genomics, January 2017

Regulation of transcriptional elongation in pluripotency and cell differentiation by the PHD-finger protein Phf5a
Strikoudis A, Lazaris C, Trimarchi T, Galvao Neto AL, Yang Y, Ntziachristos P, Rothbart S, Buckley S, Dolgalev I, Stadtfeld M, Strahl BD, Dynlacht BD, Tsirigos A* and Aifantis I* (*co-corresponding author)
Nature Cell Biology, October 2016

Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associated pluripotency genes
Di Micco R, ..., Tsirigos A* and Hernando E (*co-corresponding author)
Cell Reports, September 2014

Contrasting roles of histone 3 lysine 27 demethylases in acute lymphoblastic leukaemia
Ntziachristos P, Tsirigos A* et al. (*co-first and co-corresponding author)
Nature, August 2014

Genome-wide mapping and characterization of novel Notch-regulated long non-coding RNAs in acute leukemia
Trimarchi T, Bilal E, Ntziachristos P, Fabbri G, Dalla-Favera R, Tsirigos A* and Aifantis I* (*co-corresponding author)
Cell, July 2014

Genetic Inactivation of the PRC2 Complex in T-Cell Acute Lymphoblastic Leukemia
Ntziachristos P, Tsirigos A* et al. (*co-first and co-corresponding author)
Nature Medicine, February 2012

GenomicTools: a computational platform for developing high-throughput analytics in genomics
Tsirigos A*, Haiminen N, Bilal E, Utro F (*corresponding author)
Bioinformatics, November 2011

OMiR: Identification of associations between OMIM diseases and microRNAs
Rossi S, Tsirigos A*, Amoroso A, Mascellani N, Rigoutsos I, Calin GA, Volinia S (*co-first author)
Genomics, October 2010

Alu and B1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes
Tsirigos A*, Rigoutsos I (*co-corresponding author)
PLoS Computational Biology, December 2009

Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs
Tsirigos A, Rigoutsos I
Nucleic Acids Research, May 2008

A sensitive, support-vector-machine method for the detection of horizontal gene transfers in viral, archaeal and bacterial genomes
Tsirigos A, Rigoutsos I
Nucleic Acids Research, July 2005

A new computational method for the detection of horizontal gene transfer events
Tsirigos A, Rigoutsos I
Nucleic Acids Research, February 2005